add_covered_regions
Usage
add_covered_regions(
target_cesa = NULL,
source_cesa = NULL,
covered_regions = NULL,
covered_regions_name = NULL,
coverage_type = NULL,
covered_regions_padding = 0
)Arguments
- target_cesa
CESAnalysis with annotated variants that the covered regions will be added to
- source_cesa
Another CESAnalysis to copy all covered regions from
- covered_regions
A GRanges object or BED file path with genome build matching the target_cesa, if not using source_cesa
- covered_regions_name
A name to identify the covered regions, if not using source_cesa
- coverage_type
exome, genome, or targeted (if not using source_cesa)
- covered_regions_padding
optionally, add +/- this many bp to each interval in covered_regions