Save a CESAnalysis in progress

Saves a CESAnalysis to a file by calling using base R's saveRDS function. Also updates run history for reproducibility. Files saved should be reloaded with load_cesa().

Usage

save_cesa(cesa, file)

Arguments

cesa

CESAnalysis to save

file

filename to save to (must end in .rds)

Details

Note that the genome reference data associated with a CESAnalysis (refset) is not actually part of the CESAnalysis, so it is not saved here. (Saving this data with the analysis would make file sizes too large.) When you reload the CESAnalysis, you can re-associate the correct reference data.